3.1.1.2.1.4. etfl.core.enzyme

ME-related Enzyme subclasses and methods definition

3.1.1.2.1.4.1. Module Contents

3.1.1.2.1.4.1.1. Classes

Enzyme	Helper class that provides a standard way to create an ABC using
Peptide	Subclass to describe peptides resulting from gene translation
Ribosome	Helper class that provides a standard way to create an ABC using
RNAPolymerase	Helper class that provides a standard way to create an ABC using

class ETFL.Enzyme(id=None, kcat=None, kcat_fwd=None, kcat_bwd=None, kdeg=None, composition=None, *args, **kwargs)

Bases: etfl.core.macromolecule.Macromolecule

Helper class that provides a standard way to create an ABC using inheritance.

init_variable(self, queue=False)

Attach an EnzymeVariable object to the Species. Needs to have the object attached to a model

Returns

property molecular_weight(self)

Necessary for scaling Use Biopython for this

Returns

class ETFL.Peptide(id=None, gene_id=None, sequence=None, **kwargs)

Bases: cobra.Metabolite

Subclass to describe peptides resulting from gene translation

property gene(self)

property peptide(self)

property molecular_weight(self)

static from_metabolite(met, gene_id=None)

class ETFL.Ribosome(id=None, kribo=None, kdeg=None, composition=None, rrna=None, *args, **kwargs)

Bases: Enzyme

Helper class that provides a standard way to create an ABC using inheritance.

property kribo(self)

property molecular_weight(self)

Necessary for scaling Use Biopython for this

Returns

class ETFL.RNAPolymerase(id=None, ktrans=None, kdeg=None, composition=None, *args, **kwargs)

Bases: Enzyme

Helper class that provides a standard way to create an ABC using inheritance.

property ktrans(self)