3.1.1.8.1.1. etfl.tests.small_model

Utilities to create a small model from a 1 reaction model in FBA

3.1.1.8.1.1.1. Module Contents

3.1.1.8.1.1.1.1. Functions

create_fba_model(solver=DEFAULT_SOLVER)
add_e_metabolites(model)	Adds the metabolites necessary for the expression partof the problem:
create_etfl_model(has_thermo, has_neidhardt, n_mu_bins=64, mu_max=3, optimize=True, solver=DEFAULT_SOLVER)
create_simple_dynamic_model()

3.1.1.8.1.1.1.2. Attributes

CPLEX
GUROBI
GLPK
DEFAULT_SOLVER
essentials
model

ETFL.CPLEX = optlang-cplex

ETFL.GUROBI = optlang-gurobi

ETFL.GLPK = optlang-glpk

ETFL.DEFAULT_SOLVER

ETFL.essentials

ETFL.create_fba_model(solver=DEFAULT_SOLVER)

ETFL.add_e_metabolites(model)

Adds the metabolites necessary for the expression partof the problem: Amino acids, (d)N(M/T)Ps, PPi :param model: :return:

ETFL.create_etfl_model(has_thermo, has_neidhardt, n_mu_bins=64, mu_max=3, optimize=True, solver=DEFAULT_SOLVER)

ETFL.create_simple_dynamic_model()

ETFL.model