Welcome to the ETFL documentation!

ETFL is a framework to account for expression, resource allocation, and thermodynamic constraints on stoichiometric models.

You can have a look at our preprint 1 on BiorXiv for more information on the formulation and results on an E. coli model.

Contents:

• 1. Quick start
• 2. SOP for creating an ETFL model
  • 2.1. Checklist
  • 2.2. Setup
  • 2.3. From COBRA to ETFL
  • 2.4. Additional documentation
  • 2.5. Acknowledgments
  • 2.6. References
• 3. API Reference
  • 3.1. etfl

Indices and tables

• Index

• Module Index

• Search Page

1

Salvy, Pierre, and Vassily Hatzimanikatis. “ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints.” bioRxiv (2019): 590992.